They are identical, except one has a 30-minute timer, the other a 60-minute timer. Their effects are unknown, they are entirely experimental, but they use the same patterns as clinical TMS, with much lower energy levels.
the C5 manual shows the scTMS programs running on 10pps.
What is the difference of the scTMS compared to the 10pps-fixed-constant frequency protocol?
There is no difference other than the fact that the scTMS protocols have a time limit (30 or 60 minutes), based on the 30 or 60 minute limits on the clinical TMS systems.